{ "_id": "6ac4c6cdf511ae58c09a12fd", "Package": "markovMSM", "Type": "Package", "Title": "Methods for Checking the Markov Condition in Multi-State\nSurvival Data", "Version": "0.1.3", "Authors@R": "c(\nperson(\ngiven = \"Gustavo\",\nfamily = \"Soutinho\",\nrole = c(\"aut\", \"cre\"),\nemail = \"gustavosoutinho@sapo.pt\",\ncomment = c(ORCID = \"0000-0002-0559-1327\")\n),\nperson(\ngiven = \"Luis\",\nfamily = \"Meira-Machado\",\nrole = \"aut\",\nemail = \"lmachado@math.uminho.pt\",\ncomment = c(ORCID = \"0000-0002-8577-7665\")\n)\n)", "Description": "The inference in multi-state models is traditionally\nperformed under a Markov assumption that claims that past and\nfuture of the process are independent given the present state.\nIn this package, we consider tests of the Markov assumption\nthat are applicable to general multi-state models. Three\napproaches using existing methodology are considered: a simple\nmethod based on including covariates depending on the history\nin Cox models for the transition intensities; methods based on\nmeasuring the discrepancy of the non-Markov estimators of the\ntransition probabilities to the Markov Aalen-Johansen\nestimators; and, finally, methods that were developed by\nconsidering summaries from families of log-rank statistics\nwhere patients are grouped by the state occupied of the process\nat a particular time point (see Soutinho G, Meira-Machado L\n(2021) and Titman AC, Putter H\n(2020) ).", "License": "GPL-3", "RoxygenNote": "7.2.1", "Encoding": "UTF-8", "LazyLoad": "yes", "LazyData": "yes", "NeedsCompilation": "yes", "VignetteBuilder": "knitr", "Packaged": { "Date": "2026-10-06 09:56:54 UTC", "User": "root" }, "Author": "Gustavo Soutinho [aut, cre]\n(), Luis Meira-Machado\n[aut] ()", "Maintainer": "Gustavo Soutinho ", "Repository": "https://gsoutinho.r-universe.dev", "Date/Publication": "2023-02-15 08:10:02 UTC", "RemoteUrl": "https://github.com/cran/markovMSM", "RemoteRef": "HEAD", "RemoteSha": "223605b3950575e6caf2a26893e138c3da14596e", "_user": "gsoutinho", "_type": "src", "_file": "markovMSM_0.1.3.tar.gz", "_fileid": "https://r2.ropensci.org/1869c513e5fba09ff389a3cb9efcd6b65b068de21cfc9556608c5b3e3dd0321f", "_filesize": 230660, "_sha256": "1869c513e5fba09ff389a3cb9efcd6b65b068de21cfc9556608c5b3e3dd0321f", "_expires": "2027-01-14T10:00:43.000Z", "_created": "2026-10-06T09:56:54.000Z", "_published": "2026-10-06T10:00:44.950Z", "_jobs": [ { "job": 112212485697, "time": 130, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11404135683" }, { "job": 112212485696, "time": 127, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11403496493" }, { "job": 112212485608, "time": 179, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11404400135" }, { "job": 112212485896, "time": 160, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11404045678" }, { "job": 112210932433, "time": 248, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11403054642" }, { "job": 112212485520, "time": 105, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11403426596" }, { "job": 112212485702, "time": 106, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11403316904" }, { "job": 112212485888, "time": 86, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11404230273" }, { "job": 112212485824, "time": 99, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11403876102" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/gsoutinho/actions/runs/37445986812", "_status": "success", "_upstream": "https://github.com/cran/markovMSM", "_commit": { "id": "223605b3950575e6caf2a26893e138c3da14596e", "author": "Gustavo Soutinho ", "committer": "cran-robot ", "message": "version 0.1.3\n", "time": 1676448602 }, "_maintainer": { "name": "Gustavo Soutinho", "email": "gustavosoutinho@sapo.pt", "login": "gsoutinho", "description": "", "uuid": 2633897, "orcid": "0000-0002-0559-1327" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "survival", "role": "Imports" }, { "package": "mstate", "role": "Imports" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "doParallel", "role": "Suggests" }, { "package": "devtools", "role": "Suggests" }, { "package": "bibtex", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "gsoutinho", "count": 4, "uuid": 2633897 } ], "_userbio": { "uuid": 2633897, "type": "user", "name": "gsoutinho", "followers": 1 }, "_downloads": { "count": 360, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/markovMSM" }, "_searchresults": 19, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/markovMSM.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md" ], "_realowner": "gsoutinho", "_cranurl": false, "_releases": [ { "version": "0.1.0", "date": "2021-11-23" }, { "version": "0.1.1", "date": "2022-09-29" }, { "version": "0.1.2", "date": "2023-01-05" }, { "version": "0.1.3", "date": "2023-02-15" } ], "_exports": [ "AUC.test", "eventsMSM", "LR.test", "PHM.test", "plot.markovMSM", "prepMSM", "print.markovMSM", "summary.markovMSM", "transMatMSM" ], "_datasets": [ { "name": "colonMSM", "title": "Chemotherapy for Stage B/C colon cancer.", "object": "colonMSM", "class": [ "data.frame" ], "fields": [ "time1", "event1", "Stime", "event", "rx", "sex", "age", "obstruct", "perfor", "adhere", "nodes", "differ", "extent", "surg", "node4" ], "rows": 929, "table": true, "tojson": true }, { "name": "ebmt4", "title": "Data from the European Society for Blood and Marrow Transplantation (EBMT).", "object": "ebmt4", "class": [ "data.frame" ], "fields": [ "id", "rec", "rec.s", "ae", "ae.s", "recae", "recae.s", "rel", "rel.s", "srv", "srv.s", "year", "agecl", "proph", "match" ], "rows": 2279, "table": true, "tojson": true }, { "name": "prothr", "title": "Liver cirrhosis data - Abnormal prothrombin levels in liver cirrhosis.", "object": "prothr", "class": [ "msdata", "data.frame" ], "fields": [ "id", "from", "to", "trans", "Tstart", "Tstop", "status", "treat" ], "rows": 2152, "table": true, "tojson": true } ], "_help": [ { "page": "AUC.test", "title": "Global test and local test for checking the Markov condition on Multi-state Models based on the Area Under the two curves (AUC) given by the non-Markov estimators of the transition probabilities to the Markov Aalen-Johansen estimators.", "topics": [ "AUC.test" ] }, { "page": "colonMSM", "title": "Chemotherapy for Stage B/C colon cancer.", "topics": [ "colonMSM" ] }, { "page": "ebmt4", "title": "Data from the European Society for Blood and Marrow Transplantation (EBMT).", "topics": [ "ebmt4" ] }, { "page": "eventsMSM", "title": "Count number of observed transitions.", "topics": [ "eventsMSM" ] }, { "page": "LR.test", "title": "Log-rank based test for the validity of the Markov assumption.", "topics": [ "LR.test" ] }, { "page": "PHM.test", "title": "Cox PH global test for checking the Markov condition on Multi-state Models.", "topics": [ "PHM.test" ] }, { "page": "plot.markovMSM", "title": "Plot for an object of class \"markovMSM\"", "topics": [ "plot.markovMSM" ] }, { "page": "prepMSM", "title": "Function to prepare data set for multi-state modeling in long format from data set in wide format.", "topics": [ "prepMSM" ] }, { "page": "print.markovMSM", "title": "Pritting fits of \"markovMSM\" class.", "topics": [ "print.markovMSM" ] }, { "page": "prothr", "title": "Liver cirrhosis data - Abnormal prothrombin levels in liver cirrhosis.", "topics": [ "prothr" ] }, { "page": "summary.markovMSM", "title": "Summarizing fits of \"markovMSM\" class.", "topics": [ "summary.markovMSM" ] }, { "page": "transMatMSM", "title": "Define transition matrix for multi-state model.", "topics": [ "transMatMSM" ] } ], "_readme": "https://github.com/cran/markovMSM/raw/HEAD/README.md", "_rundeps": [ "data.table", "lattice", "Matrix", "mstate", "RColorBrewer", "rlang", "survival", "viridisLite" ], "_vignettes": [ { "source": "Vignette-markovMSM.Rmd", "filename": "Vignette-markovMSM.html", "title": "markovMSM: An R package for checking the Markov condition in multi-state survival data", "author": "Gustavo Soutinho and Luis Meira-Machado", "engine": "knitr::rmarkdown", "headings": [ "Application of the markovMSM for testing Markov assumption for more complex multi-state models", "References" ], "created": "2022-09-29 19:00:09", "modified": "2022-09-29 19:00:09", "commits": 1 } ], "_score": 2.9777236052888476, "_indexed": true, "_nocasepkg": "markovmsm", "_universes": [ "gsoutinho" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.3", "date": "2026-10-06T09:59:00.000Z", "distro": "resolute", "commit": "223605b3950575e6caf2a26893e138c3da14596e", "fileid": "https://r2.ropensci.org/4229e9b4f66d10619ce186b972c549f0d532220b60ca20d1888ef0e6eddb31ce", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/gsoutinho/actions/runs/37445986812" }, { "r": "4.6.1", "os": "linux", "version": "0.1.3", "date": "2026-10-06T09:58:56.000Z", "distro": "resolute", "commit": "223605b3950575e6caf2a26893e138c3da14596e", "fileid": "https://r2.ropensci.org/2e55fac5380e6f5645cd61a66c19fefc5be4236defa6b68babdcaf2aa48825a5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/gsoutinho/actions/runs/37445986812" }, { "r": "4.5.3", "os": "mac", "version": "0.1.3", "date": "2026-10-06T09:59:30.000Z", "commit": "223605b3950575e6caf2a26893e138c3da14596e", "fileid": "https://r2.ropensci.org/c8f88752177ae2e221233bc007fbcdc7e794bc8f0fa34e16b3045942a80c8a98", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/gsoutinho/actions/runs/37445986812" }, { "r": "4.6.1", "os": "mac", "version": "0.1.3", "date": "2026-10-06T09:59:07.000Z", "commit": "223605b3950575e6caf2a26893e138c3da14596e", "fileid": "https://r2.ropensci.org/32a87b6528b63c362ea9f0703656d2e319d5f1f44b56933a3bf621b58d0e9449", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/gsoutinho/actions/runs/37445986812" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.3", "date": "2026-10-06T09:58:58.000Z", "commit": "223605b3950575e6caf2a26893e138c3da14596e", "fileid": "https://r2.ropensci.org/b7a6536a78cb2cd7cde8c33c7060555b89ea19e9b55d70cc0eed98ef6485db52", "status": "success", "buildurl": "https://github.com/r-universe/gsoutinho/actions/runs/37445986812" }, { "r": "4.7.0", "os": "win", "version": "0.1.3", "date": "2026-10-06T09:58:18.000Z", "commit": "223605b3950575e6caf2a26893e138c3da14596e", "fileid": "https://r2.ropensci.org/cf6c81f1634422246db27dcec85e625e4d6f46775b173fb55a40bfdd0e7ada3f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/gsoutinho/actions/runs/37445986812" }, { "r": "4.5.3", "os": "win", "version": "0.1.3", "date": "2026-10-06T09:58:04.000Z", "commit": "223605b3950575e6caf2a26893e138c3da14596e", "fileid": "https://r2.ropensci.org/5456407d2feb62f4e4c68d5d82d078a97a48e5b053beb24e727b22bd72f823c7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/gsoutinho/actions/runs/37445986812" }, { "r": "4.6.1", "os": "win", "version": "0.1.3", "date": "2026-10-06T09:58:17.000Z", "commit": "223605b3950575e6caf2a26893e138c3da14596e", "fileid": "https://r2.ropensci.org/3da3bc8a4cd358f94097ff7b38e2c857bf282f61e105ad3c365cd579206c1271", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/gsoutinho/actions/runs/37445986812" } ] }