Package: markovMSM 0.1.3

markovMSM: Methods for Checking the Markov Condition in Multi-State Survival Data

The inference in multi-state models is traditionally performed under a Markov assumption that claims that past and future of the process are independent given the present state. In this package, we consider tests of the Markov assumption that are applicable to general multi-state models. Three approaches using existing methodology are considered: a simple method based on including covariates depending on the history in Cox models for the transition intensities; methods based on measuring the discrepancy of the non-Markov estimators of the transition probabilities to the Markov Aalen-Johansen estimators; and, finally, methods that were developed by considering summaries from families of log-rank statistics where patients are grouped by the state occupied of the process at a particular time point (see Soutinho G, Meira-Machado L (2021) <doi:10.1007/s00180-021-01139-7> and Titman AC, Putter H (2020) <doi:10.1093/biostatistics/kxaa030>).

Authors:Gustavo Soutinho [aut, cre], Luis Meira-Machado [aut]

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NEWS

# Install 'markovMSM' in R:
install.packages('markovMSM', repos = c('https://gsoutinho.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • colonMSM - Chemotherapy for Stage B/C colon cancer.
  • ebmt4 - Data from the European Society for Blood and Marrow Transplantation (EBMT).
  • prothr - Liver cirrhosis data - Abnormal prothrombin levels in liver cirrhosis.

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.95 score 18 scripts 234 downloads 9 exports 8 dependencies

Last updated 2 years agofrom:223605b395. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winOKOct 31 2024
R-4.5-linuxOKOct 31 2024
R-4.4-winOKOct 31 2024
R-4.4-macOKOct 31 2024
R-4.3-winOKOct 31 2024
R-4.3-macOKOct 31 2024

Exports:AUC.testeventsMSMLR.testPHM.testplot.markovMSMprepMSMprint.markovMSMsummary.markovMSMtransMatMSM

Dependencies:data.tablelatticeMatrixmstateRColorBrewerrlangsurvivalviridisLite

markovMSM: An R package for checking the Markov condition in multi-state survival data

Rendered fromVignette-markovMSM.Rmdusingknitr::rmarkdownon Oct 31 2024.

Last update: 2022-09-29
Started: 2022-09-29